Cook County Coyote Project: Long-term research study focused on urban coyote ecology. Fantastic resource for information about urban coyotes.
Portland Urban Coyote Project: Urban coyote research project using citizen-based monitoring to investigate coyote distribution in Portland, OR.
Urban Wildlife Institute: Research organization within the Lincoln Park Zoo focused on studying and managing urban wildlife in Chicago, IL.
The Natural History of the Urban Coyote: Photojournalism project documenting the natural history of urban coyotes across North America.
Wisconsin Department of Natural Resources: Wisconsin DNR urban wildlife resource page. Provides information for many common urban species. 
Keep Wildlife Wild: Wisconsin DNR initiative to minimize unnecessary human-wildlife conflict, especially in urban areas.